Scaffold Ga0307398_10589549

Overview

Basic Information

• Taxon OID: 3300030699
• Scaffold ID: Ga0307398_10589549
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-11 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 615
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -66.538
  • Long. (^o): -0.0103
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063325	Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307398_105895491	F063325	AGAAGG	VFDRLFWESTVVMLELFANCMSSWATSESSEWNNCFMCKDVIHVIDCFLHVQTFASASCFICGLEMSSQIVNSAFSRFGWL