Scaffold Ga0268250_10081878

Overview

Basic Information

• Taxon OID: 3300030692
• Scaffold ID: Ga0268250_10081878
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - As.Sf.e (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1336
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033622	Metagenome	177	Y
F054465	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268250_100818781	F033622	AGG	MFNGITEKDHSVTILPASSDEEIAERINASVSSYTTESNGDTFKPDMVFESFHHQAQILISNRALLAGFLMLWLKRCVVPTLPHEVIIADVVYPAVLLAYGRSIALLPAMVAEIQSGLRALTQSLCKVEAIVDSASRPEVDSEGRLRVKTPNPWVELSYTYLMAWYVMHCPSLMTPVSRSEGFVPFVQRLE
Ga0268250_100818782	F054465	N/A	HDGDYKWVRQIEGRKFFLPNMERMYPLSYLQHMSVPWAMEWELARSVPSVSLGILGARKVHPAGHGREVFGLFPGLLRSEYPVGETPQLSTTFINQFMKVGGDSPVDFRPLGWVHSSDKSWWGKMVGFVLAELGGLLDQVGLYQAVRAVQYGIPQSSHNFYGILEHYNPLMGTFFTPVGKMGLALHELYEVSGLVMGDAPYEEYVPSFEELHLLKKECLRVYETYWKVLCHFHICGKITSWRTRGVKQMS