NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0268250_10043459

Scaffold Ga0268250_10043459


Overview

Basic Information
Taxon OID3300030692 Open in IMG/M
Scaffold IDGa0268250_10043459 Open in IMG/M
Source Dataset NameAgave microbial communities from Guanajuato, Mexico - As.Sf.e (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1728
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065264Metagenome127Y
F067262Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0268250_100434591F067262GGAMMEKQTGKKITKLQISIVERYRNQFLRFGQNTGIGTHFTDGIHGLAKEIYRSLLEKVRCLLSNSQLDKSFWDEVIV
Ga0268250_100434592F065264AGGMRFEHGGEKSLQAPAKKGSLEGASTCNLELGEHNVLDKKKVKFRTHHSASVLDCVHVSIWGPAKITSLGGHRYFIFFIDNLFRHYWIHPMRQRF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.