NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302317_10301132

Scaffold Ga0302317_10301132


Overview

Basic Information
Taxon OID3300030677 Open in IMG/M
Scaffold IDGa0302317_10301132 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028867Metagenome / Metatranscriptome190Y
F037301Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0302317_103011321F028867N/ALEGNAPGATCDATTIPSCPITPVISPAFSDHTDQLTVGFNWYLNYWVLVKSDFNLNQLKNPSVQGILPRNYFVFIEGIQFRF
Ga0302317_103011322F037301AGGAGGMKPKMLPLLSLVALLGVMFISNSCSSSSKNCPVCGTDKNGTIGLIDVMLVPEHNPNGEPGGPFNIFDISWVDPVNRLYYVSDRVGLDVPVFSTTSNIALWAIGGQNSI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.