Scaffold Ga0316363_10001867

Overview

Basic Information

• Taxon OID: 3300030659
• Scaffold ID: Ga0316363_10001867
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17324
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F004122	Metagenome / Metatranscriptome	452	Y
F045880	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316363_100018671	F045880	N/A	RRRVNCVGPARLLLNLDDATELAQFLGEAVESRPPVANIEHGVLVCECGHRGTPRLEESGYQVSHALVEIVGDTIIASGWDGSSRAVSEDGDEYWLMCDGCGKLHPLPAELHIDWR
Ga0316363_100018674	F004122	N/A	MTEKGLSDSGRRSAELRYEWQSFLGLLPVLNLRPMDPVLYQRCLTAVWRSRKSAISRTDLRQAAGLAFQEETLDFDLLVARLVREGILEPIVSSPFLFQIRRRNWTNPESAYAADDRLSLTAISREEQTARFRMLGLLDARILNLRLPEKRVQQIRKERDELERIYEATWLELENALGSKAAEAIRKNVEETTEAGAVQLDLPLEKKRNFDLEGEARCNQ
Ga0316363_100018677	F000586	N/A	MWGSVPETNSNHQQFQTLCFMAPDIIQADMNHADPNTMRARARQATEILKTQLLGTGAIEPLVALYFDDHIEQVEFQDPSVLEHFDVRTVRSFDYLRTLVRIKNPQAAMITLDVRMGPFESDERDVLADTTAIFLMLDSPLLTIQVLLPYTRCGGRTAVSNVHYTEMPGDEGGTPCPLFKIFSDVPVAVC