Scaffold Ga0247636_10022236

Overview

Basic Information

• Taxon OID: 3300030634
• Scaffold ID: Ga0247636_10022236
• Source Dataset Name: Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1226
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Rollainville
• Coordinates
  • Lat. (^o): 48.3625
  • Long. (^o): 5.7397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F016640	Metagenome / Metatranscriptome	245	Y
F025222	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247636_100222361	F016640	N/A	FIVVVIAGASWMAWNRWTDWRTPIRSQLSAERSPQTRAFEAFAHGNTCLAEGRFADATAAFQWGGTLDPKRPYVAERLAEVARRQHAASAPVPVAAGG
Ga0247636_100222362	F013869	GGAGG	MTIAKVLAVYKTAPLVLVVESTEGTVCELSLTDLHGAGHQLSDDACTSLVEDYQLFTCQSAAG
Ga0247636_100222363	F025222	AGGAGG	MIAFDAMEPEHMAFLYELYTRSAGDARQGVPYEALIDALGFGERVTKRIQRALEREGLVDLTAIPQMTTVSRTVMDRVRQQHHQQTIGMTLQGMRLMEDIFATRADTARPTPSASPPA