Scaffold Ga0210279_10013009

Overview

Basic Information

• Taxon OID: 3300030631
• Scaffold ID: Ga0210279_10013009
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO086SO (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1366
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → unclassified Candidatus Eremiobacteraeota → Candidatus Eremiobacteraeota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2779
  • Long. (^o): -71.0916

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062023	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210279_100130092	F062023	GGAGG	VKTIGLLLAALVGLSGQAPAPAARHLVYEFGYNTKVASAGQGTGTTTVDISGPVADGGVMVSGTDSWWNSVRPRATNTCEVYPNGNVTCSQSPYALSPIQLTLFPLLAHNFFKGLSANGKSSWQRSYHVRAAIVPGASGFAGQPYTWNCSYSLHGQGPIANAGALVLITAQGTLDQQSGRYLKATSKQRTVWDPVLKVPAIVNDVRTHIPQRSVYSNDSIELKLTKDSKNKT