Scaffold Ga0210268_1290313

Overview

Basic Information

• Taxon OID: 3300030629
• Scaffold ID: Ga0210268_1290313
• Source Dataset Name: Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 554
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.321
  • Long. (^o): -71.0886

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037072	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210268_12903131	F037072	N/A	AFVLLAALFLAVVAFASAQRAERLDYILEYRGRCFNRRPDGRGECEVKASSEEFLTRIKGDGKVHLEVVRLIGSVSVMRISDQLYSNQTYSARGNVTFGIHTTHEQHKLHFQNVNLGKQTPTKDTNLYGVATINNVVAGEGALKGAVGTITINGVILRDSGEAILSAVGVIWV