Scaffold Ga0311354_11333723

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311354_11333723

Scaffold Ga0311354_11333723

Overview

Basic Information
Taxon OID	3300030618 Open in IMG/M
Scaffold ID	Ga0311354_11333723 Open in IMG/M
Source Dataset Name	II_Palsa_E3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	642
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017198	Metagenome / Metatranscriptome	242	Y
F027036	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311354_113337232	F027036	GGAGG	VSGRAAAGAHGRLRVVDSDLSPRRDSVARLHRFQGDHTEVQFTSPAVGPYGQYTALIPAETIPGENREIIVKSPDLCGLMDQLDDLFTALADPA
Ga0311354_113337233	F017198	GGTGG	MRYRDMEKVDLDAARRSVSGWLDEHPSGSLPQMADELKVNYPAFPDEMAVVLRGIMTAELRRRTSPVIRRQP

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