NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311354_10265722

Scaffold Ga0311354_10265722


Overview

Basic Information
Taxon OID3300030618 Open in IMG/M
Scaffold IDGa0311354_10265722 Open in IMG/M
Source Dataset NameII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013515Metagenome / Metatranscriptome270N
F072837Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0311354_102657221F072837N/AMHHNQIIAVLRKHGFAEGRLIANSKSGYCKRHRSYFVVFNAQVCNIRGRLIKQADLDLTLDGEKLTAAARAAGENFYVFYENDPSPFWVRGSIPMPRVLRDAVWWTRIHQGDEDLFLPMNSGPLEKKRVRLRCSM
Ga0311354_102657222F013515GGAMTALGYPFSARDIFGDLRSRLAAEHRHPMSFERLAKMLGRSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRLAHAPGKTGKLLELLDRKAGLTIITGGTDFSRTFVFTALAHAASRADGKLPAAAGIDLHRSNLFVPVESLIYINGDLGLDHARRLTQRIWPRVLTSGAPRLFFNRVWSSMPEVRDDLLRCAGFKHVVIAEEGASNVGDLTTRVSFPIHVLTLSTAQFVPEGILVNCRRVQRAKRPGN
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