Scaffold Ga0311356_10364177

Overview

Basic Information

• Taxon OID: 3300030617
• Scaffold ID: Ga0311356_10364177
• Source Dataset Name: II_Palsa_N2 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F018046	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0311356_103641771	F018046	GAGG	MPVVGSSAYNTAGQITSLVRSLLNDAAGNLFTDTVLLPYANSAYRKVQRAIGNAG
Ga0311356_103641773	F000512	N/A	WNRLSWIGGKFEDRDAVGNLLREAVELRREPKYAAVNRWHIERWMPPETYGSPRQWYAQTIERENGLSIPALGPFPYRGEYEHCFTLQDRLGEFVQLTAAAAEHIAHAIEWSRKAPRAAGKRRIDERSAREERAGDQWSYDLLDDAVPAFHKQPFVTVA