Scaffold Ga0272442_10000106

Overview

Basic Information

• Taxon OID: 3300030616
• Scaffold ID: Ga0272442_10000106
• Source Dataset Name: Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Form-2O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135095
• Total Scaffold Genes: 178
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 139 (78.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location

• Location Name: USA: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.5758
  • Long. (^o): -70.6394
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015275	Metagenome / Metatranscriptome	256	Y
F015411	Metagenome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272442_10000106166	F015411	GAGG	MSRPRGVFGRKDGTQIGRKQGGRGRNRTPICRHPKKKRR
Ga0272442_1000010634	F015275	AGGAG	MGVVVSLIILAVGVFAFFVTIGQINPAIGPYGNQSNSIAHAAVNNTSTTGNSVFNIIGIVLIIGAIMSIVGLVYNYVR
Ga0272442_1000010635	F015275	AGGAGG	MKATFGFIDPGAIMGVVVSLIILAVGVFAFFITIGEIPTSASDPVAWGAINNTSSTGNSVFNIIGIVLIIGAIMSIVGLVYNYVR