NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257196_1105931

Scaffold Ga0257196_1105931


Overview

Basic Information
Taxon OID3300030612 Open in IMG/M
Scaffold IDGa0257196_1105931 Open in IMG/M
Source Dataset NameMetatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)898
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)46.9233Long. (o)-110.8694Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009688Metagenome / Metatranscriptome314Y
F024793Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0257196_11059311F009688GGAGMLSFPDRHLAHPFGAAGFPTPFSTASGVSGLVAGPSNAFRPWILSEAFQLASAGGCATGLPTRSRHACDFFVRVLTTGPGSATAFGGAFARNHGSRLFTLKLPLFHSPAVSFLISPALGSFSRGLPSRRLLPDTSTLFVCLSAFLIWRIQLFIFEPPESPIPC
Ga0257196_11059312F024793GAGGVNFASPELSLRFQRSRINQPDPAFPRSPGIILKLDNFNLTLNRLLRSFNEPPLVLR
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Institute for Fundamental Biomedical Research
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