Scaffold Ga0257196_1032878

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257196_1032878

Scaffold Ga0257196_1032878

Overview

Basic Information
Taxon OID	3300030612 Open in IMG/M
Scaffold ID	Ga0257196_1032878 Open in IMG/M
Source Dataset Name	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-1 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1266
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Decayed Wood Fungal Communities From Pinus Contorta In National Forests From Montana, United States

Source Dataset Sampling Location
Location Name	USA: Montana
Coordinates	Lat. (^o)	46.9233	Long. (^o)	-110.8694	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066328	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257196_10328781	F066328	N/A	TLLDMFSSNMKSALPSSESNRFELEIHARKAKMETEELVASFTGKEILKEFKFRLRRLIQANNKDPEMRRYFSEVKAFVLSSKSEEEVRSELYRQKVRDLINTGRYLIEKSKERNELEQFLETGNQLIENIKNDEYVKELRMRAGIVRSNLTYVDNEGRTKIDVDMLLKLQAALMPVLADTFQKIHIPRIEHSDPRLDFWVDNIVLCGYDIFPDNIIFHIERETELSIRDIESRGSYTRLVIHLDKLRTEIRNIEFYFKKKTMPSLSDSGLVTFRIPENGACLGIYFTIEERPGETHPRLTEGYAEFSIRKMDIEFDKSTLKHDVLLPMMIGLAKPAILSKIEKAVETNLSNALKQLGDRLTLALGEINRPSFFGGKFGSVKETIRASDPAQVYAKRRVKLE

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