NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247647_1155049

Scaffold Ga0247647_1155049


Overview

Basic Information
Taxon OID3300030570 Open in IMG/M
Scaffold IDGa0247647_1155049 Open in IMG/M
Source Dataset NameMetatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)622
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Rollainville
CoordinatesLat. (o)48.3625Long. (o)5.7397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025635Metagenome / Metatranscriptome200N

Sequences

Protein IDFamilyRBSSequence
Ga0247647_11550491F025635N/ATSLSRVVYRTLLRTTQQIESRVPKLGIEIIQKDILKDTLGPLGSNCIRARFRHMPASAENLNSALEAVRHLRVNTLPQLPDELQVRKYDTGTVFYLKYYDNLMNTKGIVYNAHDVCTDKSVIPEGLKFGLFQPFYICVIDNLVMYVPQEFIVPTEEKIRPSPLIDQLFEHVEGKYVPKSLIKGSNVQFKESNDLESQEHQTDCKN
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