Scaffold Ga0247647_1072243

Overview

Basic Information

• Taxon OID: 3300030570
• Scaffold ID: Ga0247647_1072243
• Source Dataset Name: Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb12 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 792
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Zoopagomycota → Entomophthoromycotina → Basidiobolomycetes → Basidiobolales → Basidiobolaceae → Basidiobolus → Basidiobolus meristosporus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Rollainville
• Coordinates
  • Lat. (^o): 48.3625
  • Long. (^o): 5.7397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011467	Metagenome / Metatranscriptome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247647_10722431	F011467	N/A	LRPLLDLSNLLVENIKNDEFMMLLRHYAGILKSDLTFVDIEGKVQLDMDMLSRLQKVLLPVLADTLKYIPVPRITSVDASREFWLDKIVLCSYDIIPENIKFHLESDSEFSFQDIEVKGTHTFLVIQLKHFRTELKDVEFYYKKKTFPELEDKVPRIMEGNANFDISDLDIEFDTSTIHHTVLVPMLTKMFKLQIKLQLEKEVEKNLKNWMAKLGDLMTSTIAQTNRPFLSGLEAARKAIKTSELGQVYQKRREKLE