NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247640_1007815

Scaffold Ga0247640_1007815


Overview

Basic Information
Taxon OID3300030554 Open in IMG/M
Scaffold IDGa0247640_1007815 Open in IMG/M
Source Dataset NameMetatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb5 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1495
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Rollainville
CoordinatesLat. (o)48.3625Long. (o)5.7397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000329Metagenome / Metatranscriptome1287Y
F004984Metagenome / Metatranscriptome416Y

Sequences

Protein IDFamilyRBSSequence
Ga0247640_10078151F000329GGAGMESKAMVAVQESWPVSGASLPVGEPVTLVIEEERFFGWVASEAQAHSIVCVAIEFTRGGTRVQERIPVENIQRLRDYLQAHPELRQAKEQGAWTMPSPATKH
Ga0247640_10078152F004984AGCAGGMAPTAEHIHDSTATFGECQRLVHSGRKQAGIQYLMRRWRAIPAELQTRFLHDEFLTLPVDTQASITDLLLVRSREAGIAERTAALRHQMRTDREQTVRLDAVAAGITAAYRTRWHRWGGLAALCALAALLTLLSSTF
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