Scaffold Ga0272436_1022354

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1022354
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4403
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_10223541	F008115	N/A	SEDYNVICTIICRLIKERHYVFCHXEDDDISVEETVXIMLXNVYRLHDLFSSIVSNRDSQFISTMXKSLCKXLRITASLFTVYHSEINDQSKRVNQDVERKLRIYCNYMQNDXAKXISMMKFSDNFNIFSITSMIFFYFNKEFHSRMSFDSDTTDYKTTRERLEARKADDIVIXMKELLSFDCQQLKKTKLIIEVQINKHRRDVTYEVDNXVXLSFRNVKTMRLCKDLKDKQLNLYQITAKIDIFYHLCLSVSMKHLHSIFSSKLLRSYSEDLLSEQHSESFRSITIKDDKHXKIDDILNFRRYRDRIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272436_10223545	F007840	N/A	MIDAIERQNNTRKSIESTARLIELLDDLQLIKYALFTSINRISDKESSLIARESNRSRESINSQIKQQKQLHLLLSSIALRLISSF
Ga0272436_10223546	F096305	N/A	MSRLFKERFKASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXENWYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVDE