Scaffold Ga0272436_1008019

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1008019
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10605
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036035	Metagenome	170	Y
F096307	Metagenome	104	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100801910	F036035	N/A	MKDDAMQRKHHELEKASRNYEHDDSNYSNDTLNKHTESILNCDIIEELNEREKK
Ga0272436_10080195	F096307	N/A	MLYIVVIQINASLKEDVLKHKKDIDSKDVCNTKKCVYHRNLLTICNTKKCVCLEDNKSXLEDARKEKECXVISESNLSQI
Ga0272436_10080198	F102180	N/A	LKESTLVITHHDELKELVVRMKHFANVATINQEYHEKIYKVYNDNQIFLKTMKVIISTKDQTHLQXVQIAHESI