Basic Information | |
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Taxon OID | 3300030523 Open in IMG/M |
Scaffold ID | Ga0272436_1005464 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14189 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -75.9 | Long. (o) | 159.8 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009446 | Metagenome | 317 | Y |
F016760 | Metagenome | 244 | Y |
F029944 | Metagenome | 186 | Y |
F036995 | Metagenome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272436_100546410 | F036995 | N/A | MTTYSRDDTLLTPFDGMLADGGPDRTVVEPTATETGEPAVTYYTREPDSFMPDNLRWQPITDPAEIATIEAALAQGIDPSYEVWMDQAPAALTPGDLTPIGEEATASYVWEQTGPAVGEGQLYDVTDPVVIAAYEEAHPAQGAVEIVDPADYDDAAWAADAAHATAVPSPETLDPALYDARIDALAVTGATWLEVESVGDGFALGRYAAGPIERDTNGWEPVRVGDGPDDGPMGNAYPDEATARQAAIAYNGADLDPAPVAVPDRDLTPTLDL |
Ga0272436_100546411 | F029944 | AGGAGG | MRTMDHGTGAALAYTVDSQGRVLSVREATPSPPDPVTARAGADAAPPVALRTLVAPLTWEPVQRLLAWGAREGMTAADLLDTCRAATRPTTHPTTRRRSAR |
Ga0272436_100546416 | F016760 | GGGGG | MKRQLQRAARATGRGLYILAVPKTARRSTDELRGVEISPALGLVLRLAALLVLAGTVLAVHAVGHPLLGLARDALLFVGAVVILALSGALAPQGRLVGRLLLSYAKRESARRGLTWRGRLFRALARRLEPAMSKKEKGKTNVR |
Ga0272436_10054642 | F009446 | GGGGG | MSDLGEDLARAYEARVAAADVELTPAAIRAVVRQLGGGEGRTQVAAGTRALAGELGVAVRTVQRWQKEGGEARSVARSTPGLRISVRGIATEQQRQANARAFRERVMEQGLDVGACRVMVLVYNEERARPRSIGDMHIAGTNEGLIDALDALEDGDTAAAAAAFGTAWLGTYGLDVDAEVTDVLGAFALGA |
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