Scaffold Ga0272436_1005250

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1005250
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14602
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F013598	Metagenome	269	Y
F064254	Metagenome	128	Y
F076668	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_10052501	F013598	N/A	MNFIIDLSDLYDYNAILTVICKLSKERHYISCIINDEDTTVEKTAEMLLQ
Ga0272436_100525015	F064254	N/A	MQELYESVSFLFSLSFIXFFNDVTAXNXFCMLIESIIXMIIVAALTISKSFLKFVMFSFHCIAFYSTFHLRHVNKTCLIDIQSLLHLHIVVATLSTHLSCRNXLKSILSMHSCVNNVLXDFAXLLCNHRCXCVIFDVKYXKXAALNLSFQTTLHVYLICFCMSISLVIISVR
Ga0272436_10052503	F000597	N/A	MKYVLISSMMSMLNDSFASESLITECVLSSNKISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTV
Ga0272436_10052507	F076668	N/A	MTCLLLTSSFLACASACKTFKNSMHSSDHYAIKETSVFKFTTTTKKIMHMNNALSTDILMLCNRKDATNQTLLRCAKFENIRRLQKISFSKXSLKDXLKRLCMIMLKRTCYNMIFAFNALFQVLFKKSLKTLXFSLXKVSVLLFCIITSVVEFSLTFCSMQTSTXQQFMLNASLFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVK