Scaffold Ga0272436_1002472

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1002472
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26096
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F018839	Metagenome	232	Y
F064252	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100247218	F018839	N/A	MMIAKVVTFNRLTSDLYAAVFIIAMFIESKDEAKLIKLNDFMILLNEDDFSLSRVITEEVNLFSI
Ga0272436_100247219	F001253	N/A	MKDVLISSTISSSNDFFVLKSLTTECVLSSNEISYSLKLLIDIEAADYSFINELIAQNVCDHLQIESLSLIKLKSIRKFNDYYAKKLIIYAIYSNLTVQDHMKHFIFMLIT
Ga0272436_10024727	F064252	GAG	MTIDTQEETIVELREKVLSLKKKQRSANQSRSRQSTKSQASIKNYTXRKSFTLFNNNHHKFFKFLNSFIFIDENELTXNSXRIKIDDKLQTNVDHFNNENICIIYVIFRLEDDFAEHIFARHQHDALHSYISINELFEHLKEIYNELNRNXKCHHEYNALRQAEKSFNVFYFNFIKLFSYLEYNDCTLMNDLQNKINNRLQNALSICSENFTLLTRLRIFLQDVNNKQXVNYQLRSQLCTVIIKVTVILDKCIATSSSMTTLIINYVKFIFSFISESARLSIICYTCKILSYLFKNCSQNKINTSASYAFIFYLHEIIISKNKKNEKMSSFKDSETKN