Scaffold Ga0272436_1002449

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1002449
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26294
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F028368	Metagenome	191	Y
F055318	Metagenome	138	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100244918	F057010	N/A	MTMKALKKRCEELKARLQVKEITSSSSIYSERSRFQKILDSSLFTDEKNSIXKNWYEKVQNKLKINVDLFSSKXVKLSYVHFRLFNDAAEITQSRREHDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQQLFFYLDYQEKQLIVDLKNKINFQLXFAXVTQLIQLSTLKEIRFYLIQLNNDQQVIXEIKNREAMIKAQTTKQIIFAEKSIKATCRIIEMNVTDQSKSRDAVLTSVKENDLLNENCFLCHKSDHTSKECSNKSFRINALNDEFDDSLNFDSESDSKN
Ga0272436_100244919	F028368	N/A	VKIISLCNLDEILSKENYFDKLFLVDALLILQNELFSLRSLIDSDSVIYMIIYINLVNRVCKELKIQSISLIKEKLIKEYDEKIFKKTITYKILLNLIIESHKKLIVSMLIADIDHHEVILEKSXMNKNEILLNMXINVIVFSNQLNTFISIFSISFNSKHSSXSRSTLSTFISQSKISRMLKRSVSTTIQKESFLIQSINIALFKTLLNCSKKNQTEVFTLFMKNINKEITYNTQCNLNALNVSFVEKTTQNLKAIKVKLSSEYHDFLDVFDXVQLNKLSLNRFYNHKIELINDSTFSC
Ga0272436_100244922	F011463	N/A	LKKTKLTIEIQINKHRXNVTYEVDDXVXLFFRNVKTMRLCKDLKDKQLDLYQIIAKVNIFYHLHLSISMKHLHSMFSLKLLQLYSEDSLSEQHSESLRSITIKDDEHXKINDILNFRCYQDQIQYKVKXKDLDRNNK
Ga0272436_10024496	F055318	N/A	MLHDDEALCIDRVQSFRDHADFDNLNAHATSNLHADEKVK
Ga0272436_10024497	F010214	GAG	VFVLFIYDASSLLCSSLMIFYTMMFQFNFQFKDERCFLCIHDACDCNVCRTMFSYSMIIIHCTEKHVMKERCTXXRDKVXLYXVTLFFFXFDLCHVDVEXIVSINVQSQSFNVXLXSMKENAFXSFSXTLNFSCR