Scaffold Ga0272436_1001956

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001956
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31272
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F019584	Metagenome	228	Y
F026450	Metagenome	197	Y
F040408	Metagenome	161	Y
F057010	Metagenome	136	N
F059497	Metagenome	133	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100195610	F007840	N/A	MIDVIERQNNTRKFIESTARLIELLDDLQLIKYTSFILINRISDKKSSLIARESNQSRESINS
Ga0272436_100195617	F040408	N/A	MYDYKSIFDICIENDAMKEEVSAAKERVEMLQDVQNMLMKXX
Ga0272436_100195621	F007840	N/A	MIDVIERQNNTRRFIESTARLIELLDDLQLIKYASFISINRISDKESSLIVRESNQSRESINSQIKQQKXLYLLLLSIILRSISFF
Ga0272436_100195622	F026450	N/A	MTIKALKKRCKELKARLQAKKITSSSSIYSECFRFQKILDSSLFTDEKNSIRENXYEKVQNKLKINIDLFSSERVKLSYVHFRLFDDAAEITQLRRERDCFNSYKIINELLKELAQLFNDSDKEVNFYRNYYNLIQEQKKFSEFYTQFQRLFFYLDY
Ga0272436_100195623	F019584	N/A	MIKAXTTKQIIFAEESVKATRRIIEMKMTDQSKSHDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDKFDHSXNFNSESDSKN
Ga0272436_10019567	F059497	GAG	MSIENIDREIVYNIQCKLNVLNVAFIDASAQNLENIKVKLSLKYQNFLDVFDRAQVDKLSSHRSYDHKIKFTNNVTSSRCQVYQMSLYKL
Ga0272436_10019568	F078020	N/A	MQFFFDRLINAXKDAVFTLNIKKFFFEAEEVNRXSTLRTELIEKSDDRDYFECEVLTDIEKTEMKASNXFKKTMTSFCISSSISFLFIQSFSNMTSXXFISAINIETVNFLXLSAVXLSRILXVMIFFVNFSSYSLINFSLASHMNXISSFXHIXSTSFVXIKM
Ga0272436_10019569	F057010	N/A	LFIDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFNDAVEITQSRRERDCFNSYKIIDQLLKELSQLFNDSDKEVNFHKNYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIVDLKNKINLRLXFTXVTQLIQLSTLKEIHFYLIXLNNNQRAIQEIKNKEAMIKARTTKQIIFAEESVKATRRIIEMKMTNQSKSRDAVLTNVKENDLLIENCFLCHKSDYTSKECLNKSFRINALNDKFDHSLNFNSESDSKN