Scaffold Ga0272436_1001820

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001820
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33023
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F026450	Metagenome	197	Y
F046102	Metagenome	151	Y
F055317	Metagenome	138	Y
F057011	Metagenome	136	Y
F066295	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100182011	F002432	N/A	MQNDXAKXLSMMKFSENFNIFLIISMISFYFNKEFHSXMSFDSDTTDYKTTCKRLEAKKVDDIIIQMKELLIFDHQQLKKTKQIIEAQINKHRXDIIYEVNDXVXLFFRNIKTTKSCKNLKDKQLESYQITVKVEIFYHLRLSISMKQLHLMFSSKLLRSCLNDFLSEQHSESFKSLTIEDDEHXKIDDILNFKCYQDXIQYKVKXMRLDQDNEXYYVDKEEFKSSKEVLVEFHKLYSDKSH
Ga0272436_100182016	F057011	N/A	VLXSIKSQCITRXXVXLIYIKLXVQFXFKKLTISSKVIKEIEIISLCSQIEVLLKENYFEKSFLINASLISQSNSFSLCSLIDSDFVVYTLIYDKLVDKVCQKLEIQFILLAKEKLIRDYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKLXMNKNEILLNMKHDTIVFSDQLNTSISIFLISLNTKYSS
Ga0272436_10018202	F026450	N/A	MTLSSIIEHHSSLDFFLLKHSFNSISSFSLIMSHLFKECFEASFFIVKDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYFKRSRFQKILDSSLFTDEKNSIXENXYEKVQNKLKINVDLFSSERVKLSYIHFRLFDDAAEITQSRREHDCFNSYKIVDELLKELSQLFNDSDKEVNFCRDYYNLIQEQKKFSEFYT
Ga0272436_100182028	F055317	GAG	MIKNLRELLQDQSSSETSSLLNKHTLFFFKSSSIVICSTLFQTILIFFTMTFKNTSDKDKAFVDLLQQTCLQALSSIIDLQHASSFIAFNELNAEIIIHDDMKVXKKRIYALNRETDCLVEMKQRDKSEIQQLKAKLQAFTAITVNVVITAFSIVIYFKRSKYHKILDSLMFTDEKNSTXKNXSLDIQEKLAINIDIFSNELYKLSYIHSRLADDVVEVTQIRRDLNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLVQESKKFSDFFNQFQRLYIYLKYQKNVLVVDLKNKINSRLXIFXTAQMKSLIKLSDIXNYLIRLNNEHRAVREIKNKLLKRDDSKIIISRATIAVQSSTSKSDXSK
Ga0272436_10018204	F066295	N/A	MFYEIXKTXSLALNEETDQLYELNKQQENKIKELKIKLQAKENTSFNFIYFKHFKSGKIPDSLLFTDEKNFIXKNXYEKIQNKLEINVDLFSNEXVKLSYIHSRLFNDAAKMIQARCECDYVNFYKIIDDFLKKLTQLFNDLNKKVNFRKEYYNLIQEFKKFSEFYT
Ga0272436_10018207	F046102	N/A	LSQXDHYVKRREEIIYREIEEXDKKLVTFIKDVMKDVLISLTMSSSDNFFALKSLTTECVLSSNEINYSLKSLINIEAVNYSFINELIAQNVYDHLQIESLSLIKLKSIRKFNDYYAKKLITHAVYLNLTVQDHMKRFVFMLITXLDQHQMILEKTXMNKIEMTIDMKDDCLQFSSFKAHIKAFIKAHSTVLSSKKIVIEQKSLIST