Scaffold Ga0272436_1001797

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001797
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33324
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (96.88%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018488	Metagenome	234	Y
F029944	Metagenome	186	Y
F036995	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100179726	F018488	GGAGG	MREPTRRRPVSGPGWNERAAVALLVLVAGHLLAAETVSAARPLTPDSLTHFVAAHDLPALVAVCEGSPSEQARHGAQQLRRLIRAGQAGVYQRVMPGLPVALADPYFRLALAKAARQAGLDLFPLAS
Ga0272436_10017978	F036995	AGGAG	MTNYSRDDTLLAPFDGMLADGGPDRLVFEPTATATEDPAVTYYTREPDGPGPDDFRWQAITDPAEIATIEGALAQGIDPPYEVWVDQAPAALVPGDLTPTEEGPTVYAWEQTGPAVGEGQLYEVTDPVVIAAYEEAHPAQGAVEIINPADFYDAAWATDAARATDPALYDAQIEALIARGDTWLEVEHAGGGCALGRYDAGPIERDTNGWEPVRVSDGPDDGPAGNVYPDDATARQAAIAYNGADLAGIELTLDPAPVAALDRDLTPALDL
Ga0272436_10017979	F029944	AGGAG	MDQRAGGRLAYTVDGQGLVLSVGEVTPPDPATARADAAPPSALRTLVAPLTWEPVQRLLAWGAREGMTAAELLDTCRTATRPPATQTPRGRAKGDERR