Scaffold Ga0272436

Basic Information
Taxon OID	3300030523 Open in IMG/M
Scaffold ID	Ga0272436_1001347 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300030523 Open in IMG/M

Scaffold ID

Ga0272436_1001347 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41893
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (95.74%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

41893

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (95.74%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.9	Long. (^o)	159.8	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.9

Long. (^o)

159.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008598	Metagenome	330	Y
F018488	Metagenome	234	Y
F029944	Metagenome	186	Y
F036995	Metagenome	168	Y
F074201	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_10013472	F074201	AGGAGG	MTTSGHAADDARTEQKGNPMDIVDITPTPEACHQIARLFRAQRADAEALAARATQALDNLDALDDDALEPWGRGLLAAAFEALYEDERARVRHIDEGLGALVPYADDGEGSTNVP
Ga0272436_100134723	F018488	GAGG	MREPTRRPSIGRPGWNERAAVALLVLVAGHLLAVEAGPLTPDRLARFVATQDLPALVAVCEESPSAQVRHGAQQLRRLIRAGQAQVYQRVLPGLPVALTDPFFRLALAKATATACLDLFPPGPTGQ
Ga0272436_100134742	F029944	AGGAGG	MRTMDQGTGAALAYTVDSQGRVLCVREATTTAPGPAAMHSGVAAPPPVALRTLVTPLTWEPVQRLLAWGAREGMTAAELLDSCRAATHPTTRRRSAR
Ga0272436_100134743	F036995	AGGAG	MTNAARDERDMAPYDWTRTSGPEGPAFTDEAPPLDPALDQKVTYYTREPDSFMPDDLRWQPITDPAEIATIEAALARGIDPPYEVWMDQAPAALTPGDLTPIGEEATASYAWEQTGPAVGEGQLYEVTDPVVTTAYAEAQPEPHGVEIVNPADYHDAAWAPSPATLDPALYDARIDALIATGATWLEVESAGDGFALGRYAAGPIERDTNGWEPVHVGDGPDDGPLGNAYPDEATARQAAIAYNGADLDPAPVAVPDRDLTPALDL
Ga0272436_10013477	F008598	GGCGG	MVHMAGAHGDNTTGHADVPMHVTLTTDHVTAGAAGPLADSLHAAGVTVERHTFLPVRGEEQHPWGVLLLAASGPPLPLARLVVPATALAGVALALAAALGVGEHSAPATLQLKADGVFVSIRARDALDITCALDTLPAQLARLDTRREERRLVYSEGSWRIDP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272436_1001347

Overview

Ecosystem & Geography

Associated Families

Sequences