Scaffold Ga0272436_1001322

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001322
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42544
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (51.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F019584	Metagenome	228	Y
F032102	Metagenome	180	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100132211	F007840	N/A	MIDAIERQNNTRESIKSTARLIELLDDLQLIKYASFISINRISDKESSLIARESN
Ga0272436_10013222	F032102	N/A	MKIADLEKNISESIYKQVLETNEIDENCMLLREVIARDETQYEDIKLRNCRVQNEILY
Ga0272436_10013223	F069514	GAG	MIEFVNNNALFSVIFSISFFLNKDFHSHMSFELDVIEYESSCERLQTTKVKNISEHINKTLKFARESLVKT
Ga0272436_10013228	F019584	GAG	MIKAQTTKQIIFAEESVKAIHKIIEMKMIDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNKSFRINALNDEFNHSLNFDSEFDSKN