Scaffold Ga0272436_1001095

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001095
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48598
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F019584	Metagenome	228	Y
F028978	Metagenome	189	Y
F038010	Metagenome	166	N
F046102	Metagenome	151	Y
F049323	Metagenome	146	Y
F068292	Metagenome	124	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y
F096305	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100109510	F001951	N/A	MTITKFKFIDSSRNEKERDEDIVETTVTEVMIFELKELLVDAKMLLTLINETMMKTKQD
Ga0272436_100109525	F069514	GAG	MIEFVDNNALFLIIFSTSFFLNKDFHSCMSFELDVIKYESSHECLQITKVENIFKHMNKTLKFARKSLVKT
Ga0272436_100109526	F094626	N/A	MMKQVNKHRKKVNYKIELKMFLNERNIVTAKFFKKLNDKMLNSFINLNFVDSSYKLKLSEFIYVHDVFHSDLLCSVVNNFLSDQKNEFSNSIIINDKDEXKINDILNSCX
Ga0272436_100109531	F038010	N/A	MNNDHLMLSDNLENNKINVNLSVLIDIDIIDYAFIDDFFAQRYSLFCFSLSEICILQKFDDQSIVFNLITHYTLVKLQVSNKELEETLFYITQLSQFSVVLNLL
Ga0272436_100109533	F046102	GAGG	VTFIKNVMKDVLISSTMSSSNDFFASKSLTIECILSSNEISYSLKSLIDTEAADYSFIDELIAQNVCHYLQIESLSLIKFKSIRKFNDHYAKKLITHAIYLNLTVQDHMKRFVFMLITRLDQHQMILEKTXMNKIKMTIDMKDNRLQFSSFKAHICXDRA
Ga0272436_100109536	F019584	GAG	MIKAQTTKQIIFAEESVKAIRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFNSESDSKY
Ga0272436_100109537	F096305	N/A	MSRFFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSIYSEHSRSQKIFDSFLFTDEKNFIXENXYEKVQNKLKINVDLFSSERVKLSYVHFRFSMMQLRSFSQDVNVTVSTHTRSSMSFXKS
Ga0272436_100109538	F049323	N/A	MMKEMNEESAEQTKRSAENDLKECARFKLDIASXSVLIKLIRIKSELXLIETCS
Ga0272436_100109540	F028978	N/A	MKIADLKKNISESIYKQILETNEIDENYTLFREAILKDEAQYEDIKLRNCRVQNEILYQSDLL
Ga0272436_100109544	F068292	N/A	MSRQETQSVEHRVNQKETSLISEVDQRLRSSXKSFTLFDNKNDHHKFIKLLNSLIFIETDDSIXETXNIKIADKLNVNANHYSTEKIHIVYVIFRLEDDADQQIYAKHCVNALSLYQLLSELLKHLKEIYEDQNLIRKCCCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDITLMNDIQN