Scaffold Ga0272436_1001073

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001073
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49883
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F008115	Metagenome	338	Y
F008735	Metagenome	328	Y
F018839	Metagenome	232	Y
F035571	Metagenome	171	Y
F036504	Metagenome	169	Y
F046102	Metagenome	151	Y
F070710	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100107317	F008115	N/A	MLXNVYXMHNLLSSIVSNRDSQFISTMXKSLCKRLRITTSLFTVYHSEINDQLKXVNQDVERELRIYCNYMQNNXAKXISMMKFSNNFNIFLITSMTFFYFNKEFHSXMSFNSDTTNYEMTHEQLEARKTNDIIIQMKEILSFDHQQLKKTKLIIEVQINKHRQDVTYEVNDXVXLSFKNVKTTRLCKDLKDKQLNLYQITAKVSTFYHFHLSVSMKHLHSMFSSKLLXLYSEDFLSEQHSESLRSITIEDDEHXKINNILNFRHYXNRIQYKVKXKDLNRNNEXYYVNKEKFNDSEKVLNEFYKLYSIKSR
Ga0272436_100107333	F070710	N/A	MXKTFSNXKHTKSLFSAELTTATNNFMTKQLFLHILQYNIRKSLKIQESFLINREVCKFNIIIIQKQECNINDLQLFSSAHNFFHLVKNSSSQSRTCTYVNKHLKFNQXKVETAESNICLIRLLTCNTDDEMQMLKLLNIYNSCSLFTTFTEKSSIISHLNELLKNDCKQLIIKDFNLYHSHXEEXRYFTHHTTTDTLLIIITNARLKLLLKSDIITHKTHNQFTMIDLIFNSEKIQFMTCKCKIQINLHQRLNHLLIITKLCL
Ga0272436_100107335	F035571	N/A	MYVSVFKVLIFTLLNAFATXHRIXFXSVSSLHSLFNSSSFLSCXCQTDALNAISDLTTAEYTCLAFVKIAFHVKTSRXLSVSILVMXFVFICQRCASYCSFMFSCISRTCTSDFNLITELSIYRLVIMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTSCALLNVLQISSMNLL
Ga0272436_100107341	F008735	N/A	MKEITIIVHFHALYQTLLSCIQLIFVLLILRYVKKLLESKSNDDSDKICKKMNNEKRLIVQDLCNDLSYHYKRLRIQLYINXRTENDEXEXNDDIMLSNLILKLLHYTKDLDXIFDHTLSELFNSMLIVDQEIMKXFHLSKRITRXDFNVXKRCRKCKSFVMSETRLN
Ga0272436_100107344	F001253	N/A	MKDVLISLIMSSSNNFFASKSLTTECVLSSNEINYSLKSLIDTEAADYSFIDELIMQNVYDHLQIESLSLIKLKSIRKFDDYYAKKLITYAIYFNLTVQDHMKRFIFMLITQLN
Ga0272436_10010735	F036504	N/A	VIFRLKDNADQQIYAKHHVNAFSLYQSLSELLKHLKEIYKDQNLIQKCRCKYIALKQLNKSFSFFYSKFTRIFSFLNYDDITLMNNIQNKINNHLQNVLSVYLIKFSSLNKLKIFLQDVNNKQQVNYQLCDEQXTVKLIATSKKCFVSSSTSVSVLTTSYVXFTTFFIFESEXSRMSIICFNCKVLNHLSKNCSQLKTSTSTSHAFISCLNEIIMSKEEKKLFTEKLKNEIKN
Ga0272436_10010737	F018839	N/A	MMIMKVVTFNRLISDLYAAVSIIAMFIELKDEAKLIKLNDFTILLKKDDFSLSRVTTEKIDLFSI
Ga0272436_10010738	F046102	GAG	VTFIKDVMKDVLISSTMSSLNDLFASKSLTTECVLFSNEISYSLKSLIDIEATDYSFIDELIAQNVCNHLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTVQDHMKRFASMLITXLNQHQMILEKTXMNKIEITIDMRNDYLQFSSFKTHIKTSIKAHSIVLSNKKIIIEQKSLTF