Scaffold Ga0272436_1001016

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1001016
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51808
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.09%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F008115	Metagenome	338	Y
F036504	Metagenome	169	Y
F057010	Metagenome	136	N
F086376	Metagenome	110	Y
F091080	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100101610	F036504	N/A	MSRQDTQSAEQSVNQKEAHFQXESSTLSDNENDHHKFIKLSNSLIFIETDDSIXKTXNIKIADKLNVNVNHYFIEKICIVYVIFRLEDNADQQIYAKHHIDVFSFYQSLSELLKHLKEIYEDQNLIXKCHHEYIALKQLNKFFSFFYSEFTRIFSFLNYDDITLMNNIQNKINNHLQNVLSVYLIKFNLLEKLKIFLQDVNNKQQVNYQLHDKSXTVKLIAASKKRFVSSLTSASVSITSYVXFTTFFTLEFEXSRMSIICFNCKVLNHLSKNCSQLKTSTLTFRAFISRLNEIIMSKEEKKLFTEKLKNEIKN
Ga0272436_100101625	F086376	N/A	MIRSTESESVSIAHYNFQNVRKESLLSQNXTASEEEDMNASSDTEEENINALFFDHEMIKISISTELNAXISIYEADDIIVFIKYICQQHDIEIKTHNDMIQMLKDVNKINITLKAAQTRLQKKMRNKNMIIHHLKTASS
Ga0272436_100101626	F091080	N/A	MIILCXFKXVINRNIISFLCSXIMINIYKACVIDFXSEVLLYNQIDFDFDSNIDXISKCLHNFDIKDSSMKVMSMTLVFIRVKNLNIFSKLFKMMSTVNDLKSNESSDMLIKQNMSILFSIITLTKADRFLNLQQSHALKLF
Ga0272436_10010163	F008115	N/A	MLXNVYXLHDLLSSIVSNRDFQFILIMXQSLCKXLKIKVNLSTVYHSEINDQSEXANQDVERELXIYCNYMQNDXAKXLSMMKFSDNFNTFSTILMISFYFNKDFHSRMSFDSDTTDYKTTRQCIETRKIDDIVIQMSELLIFDHQQLKKIKQIIEAQMNKHRXDVIYEVDDQVWLVFENIKITRSCKDLKDKQLDFYSITVKVEIFYRLQLFRSMKHIHSVFSSKYLQSSLNNFLSEQHSELSRLMIIEENEEHXEVNDILNFRRYRERLQYKVKXIEINHDDKXYYVNKEKFDDSKKVLNEFHKLYSNKLH
Ga0272436_100101634	F036504	N/A	MLRQDTQSAEQRVNQKEAHSQRESSTLSDNENRNNHYKFIKLSNSLIFIETDNSIXKTXNIKIVNKLDVNANHYSTEKIHIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEICKDQNLIQKCCCKYIILKQLNKSFSSFYSKFTKIFSFLNYNDIALMNDIQNKINNHLQNVLSVCLIEFSSLDKLKIFLQDVNNKQXVNYQLHDEQXTVKLIAASKKCFVSSSTSASVSTTSYVQLATFFTLESEXSRMSIICFNCKVLNHLSKNCSQLKTSTLTSHAFISCLNEIIMSKEEKKLFTEKSKNETKN
Ga0272436_100101637	F008115	N/A	MNFITELSLSKDYNVICTIIYHLIKKRHYVFCHXEDDDISVEEMIXIMLXNVYQLHDLLSSIVLNRDSQFISTMXKSLCKXLRITASLFTAYHSEINDQTKXVNQDVKRELRIYCNYMQNNXAKXISMIEFSDNVNMFSIISMISFYFNKEFHSQMSFNSDTTDYEISCEXIEVRKADDIVIXMKELLNFDHQQLKKTKLIIEAEINKHRRDIIYKIDDQIXLSFRNVKITRSCKNLKDKQLDFYSIIVKVKTFYHLHLSTSMKYIHSMFSSKLLXSYSEDSLSEQHSESLRLITIEDDEHXKIDDMLNFRCYRDRIQYKVKXKDLNKDDEXYYVNKEKIQXLRESFEXIS
Ga0272436_10010166	F057010	N/A	MTSSSIVEHRSSLDFFLLKHSFNSISSFFFIMSRLFKEHFKASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIILSSSIYSERSRFQKILDSSLFTDEKNFTXKNXYEKVQNKLEINVDLFSSERVKLNYVHFRLFNDAAEITQSRRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSKFYTQFQRLFFYLDYQEKQLIIDLKNKINFRLXFAXVTQLIQLSTLKEIRFYLIRLNNDQRAIREIKNKEAMIKAQTIKQIIFAEESVKATHRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRPFRINALDDEFDHSSNFDSESDSKN
Ga0272436_10010169	F001253	GAG	VTFIKDMIKDVLISLTISSLNDFFASKFLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRRFDDYYVKKLITHTIYSNLTVQDHMKRFIFMLITQLNQHQMILEKT