NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000805

Scaffold Ga0272436_1000805


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000805 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62736
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (28.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007840Metagenome343Y
F025887Metagenome199Y
F032884Metagenome178Y
F041516Metagenome159Y
F048685Metagenome147Y
F104131Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100080521F032884GAGLNYDEKMTIRNERVEREECEETKKNESMMTRIERERLYVQTIDVIDQXKDIKQRLXSDYM
Ga0272436_100080533F007840N/AMINAIKRQNNTREFIESTARLIELLDNLQLIKYASFISINRISDKEFSLIARESNQSRESINSQIKQQK
Ga0272436_100080535F104131N/AMFRLFKECFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSDRSRFQKILDSSLFTDEKNFIXKN
Ga0272436_100080555F048685N/AMYCSDKQNIKVNALTRQVDSVSRSSEDECICYQQITILTSNXMKIADLEKNIEKSIYKQILEINEIDENCTLLREVILKDEAQYEDIKLRNCXV
Ga0272436_100080560F025887N/AMSDNSFDFKSFTVDIILSNLEKTFRFLALIDIKVINMTFIDESLMSELCECFDI
Ga0272436_10008057F041516N/AMIQRAIHIHEAYNLSLRDYEIIHEKENLSNIKKTLHMLRENILVKYFNLHHFTXEESFYS
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