Scaffold Ga0272436_1000727

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000727
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68230
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (29.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F026450	Metagenome	197	Y
F037509	Metagenome	167	Y
F057010	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_10007271	F037509	N/A	MILIFILIQIHSIDNEMSIKKFVYLMINNIERQNNIKKSIESMKTYDNVIAREFIAQSVASIQID
Ga0272436_100072714	F007840	N/A	MIDAIERQNNTRESIESTARLIELLEDLQLIKYTSFISINRISDKESSLIARESINSQIKQQKXLYLLLLSIALRSISFF
Ga0272436_100072715	F026450	N/A	MFHLFKECFKASFFIVKDNDSFAEIITSSMTMKALKKRCKELKARLQARKIISSSSIYSERSKFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSKXVKLSYVHFRLFDDAAEITQSRRKRDCFNSYKIINELLKELSQLFNDSDKEVNFHRDYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIIDLKNKINSRLXFA
Ga0272436_100072728	F007840	N/A	MIDAIKRQNNTRESIESTARLIELLDDLQLIKYTSFISINRISDKEFSLIARESNRLRESINSQIKQQKRLHLLLLSIALRSISSF
Ga0272436_100072729	F057010	N/A	MSRLFKERFEASFFIVEDNNSFTEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIIDELLKELSQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNRINSRLRFAXITQLIQLSTLKEIHFYLIQLNNDQRAIQEIKNREAMIKAXTTKQIIFAKESVKATRRIIEMKMTDQSQSRDAVLTSIKENDLLIENCFLCHKSDHTSKECSNRSFRINALNDEFDHSLNFDSESDSKN