Scaffold Ga0272436_1000717

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000717
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68999
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (19.70%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F028368	Metagenome	191	Y
F029296	Metagenome	188	Y
F036504	Metagenome	169	Y
F039410	Metagenome	163	Y
F048685	Metagenome	147	Y
F049323	Metagenome	146	Y
F055317	Metagenome	138	Y
F057010	Metagenome	136	N
F070710	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100071710	F049323	N/A	MMKEMNEESAEQREEVLKIAQRVQQRCARFKLDITSXLTLIKLIRVRSEFXLIQTCL
Ga0272436_100071719	F039410	N/A	MNRAKTSILFFFEQFNSVLNEATSMLXIENNSLVAVIETSCLSIVEILVXVIEENEVDRDQLECFELREIEKTEIEVFNXFKKTMMSFRIFSNISFLFIQSLLNMTSXXLILAINIDMINFLXLSMMRLSRILXVMIFLDIFSS
Ga0272436_100071720	F008169	N/A	MSSRSFTEERSEEFRNRFSQISDADSLKSSSAASFLHKDDELFAETVISLVFYEIXKAQSLVLDKETDXLYELDKQQEDEIKELKTRLQTKENTSSDFIYSERSRSQKIPDSSLFTDEKNFTXENXYGKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAKITQARCERDCVNFYRIVKDFLKKLAQLFDDLNKKVNFRREYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIVDLKDKIHSRLXFVXIDQLVQSDSLKEIRFYLIHLNNDQRVIQEIKDKLKHVDDLSKTIFHKATVVTQSVDHLKSDHLKSRDAILTSVKEADSLVESCFVCHKSDHSSKECLDRPTRINAVNKEYDCFNFDFDFDFDSKN
Ga0272436_100071725	F055317	GAG	LKAQLQAFTAITVNVIISALLIVIYFKRSRYYKILDSSMFTDEKNFTXKNXSFDIQEKLAINVDIFSNELYKLSYINFQLADDVIKITQVRCNLNCDNFYLTVNELLEKLAQSFNDSDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVDLKNKINSHLXIFXTAQIKSLIKLSDIXNYLIYLNNEYRAVQEIKNKLLKCDDSKIIISKAIIAVQSSTLKSDXSKSRSAVLTNVKNADVLVETCFICHKSDHSFKECSNQFIKVNAVDENYDCFELDTESEFKSKN
Ga0272436_100071726	F028368	GAG	LFXTRYXIRVQVKKLVISSTITEVKIISLCNLDEILSKENYFDKSFLVNALLILKNESFSLRSLIDSDSVVYMIIHINLVNKVCKELRIQSISLTKEKLIKEYDEKIFKKTITHKILSNLIIESHKKLTVSMLIADIDHYKVILEKSXMNKNEILLNMQIDVIVFSNQLDTLISIFSISFNSKHLSXSXSTSFTSISQSKISRMLKRSVSTTIQKVSFSIXSINIALFKMLLNCSKKNKIEVFALFMTKINREITYNTQCNLNALNIFSIDETAQNLKDIKVKLSSKYHEFLDVFDRVQLNKLLSHHFYDHKIELISDSTSSRCRVY
Ga0272436_10007173	F057010	N/A	MTLSSIVEHHSSLDFFLLKHSFNSISSFFLIMSHLFKECFEASFFIVKDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSLSIYSKHSRSQKILNSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYIHFRLFDDAAEITQSRRERDCFNSYKIVNELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIVDLKNKINSRLQFAXVTQLIQFSTLKEIHFYLIXLNNDQRAIREIKNREAMIKAKTTKQIIFAEESVKATRRIIEMKMTD
Ga0272436_100071736	F070710	N/A	MIKQFVLXILQYNIRKSLKIQKSFLINKKVCNFNIIVIQKQSCNINDIQSFNSAHNFFYLVKNTSSQSRTCIYVNKCLRLNQXMIETAESDICLIKILTHNTDDKMQTLQLINIYSLCSLFFTFTEKSSIISCSSELLKDDCKQLIMKDFNLHHSHXKK
Ga0272436_100071756	F048685	AGTAG	MRXVQKLVDFNFKIMCRSDKQNIKVDALTRXVDSVSRSSEDECIHYQXITILTSNRMKIADLEKNISESIYKQILKTNEIDENCMLLREAILKDEAQYKDTKLRDC
Ga0272436_100071759	F036504	N/A	MNHYSIEKIHIVYVIFRLEDDADQQIYAKRCVDALSFYQSLSELLKHLKEIYENQNLIXNFHHEYIALKQLNKLFSFFYSEFTRIFNFLNYDDITLINNIQNKINNHLQNVLSVCLIEFSSLNKLKIFLQDVNNKQQVNYQLHDEQXTVKLIAALKKRFVSLLTSASVLTTSYVQLVTFFILESEXSRMSIICFNCKVSNHLSKNCSQLKTSTSTSHAFISCLNEIIMSKEEKKLFTEKSKNETKN
Ga0272436_10007179	F029296	AGCAG	MNKHRXDVIYEVNDQVXLVFENIKITRSCKDLKDKQLDLYSITVKVEIFYRLQLFKSMKHIHSMFSSKCLXSSSNNSLSRQHSELSKLMIIEENEEHXKVNDILNFRQYRERLQYKIKXIKINHDDEXYYVDKEKFDDSKKVLNEFHKLYLNKLH