Scaffold Ga0272436_1000710

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000710
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69597
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (44.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036994	Metagenome	168	Y
F044226	Metagenome	154	Y
F061401	Metagenome	131	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100071059	F044226	GAG	MMKFSDNFNIFSITSMTFFYFNKEFHSRISFNSDTTDYETTCERLEARKADDIII
Ga0272436_100071062	F036994	AGCAG	MQGRSVIEADSLIDLLIKEIDFELVIVADSLVARECMIRFTDR
Ga0272436_100071063	F061401	N/A	LNNDQRVIREIKNKLKRVDDVSKTIFHKATVVTQSVNHLKSDHLKSRDAILTSVKEADILVESCFMYHKSDHSFKKCFNRSTRINAVNKEYDRFDFNSNFDSKN
Ga0272436_100071065	F069514	GAG	MIEFINNNALFSVIFSISFFLNKDFHSRMSFELDVSEYESSCERLQTTKVENISEHMNKTLKFSQSEFNESESVKS