Scaffold Ga0272436_1000704

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000704
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70017
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (42.86%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F036036	Metagenome	170	Y
F055318	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100070448	F036036	N/A	MLVNLIHQLFSCFDQSFTSEDQCLVHLFRYILDSINLQTFASAFILNDVRVEAHTRVKVLVHEEEDQEND
Ga0272436_100070449	F013598	N/A	MNFIIDLSDSSEYNAILMIICRLSKKRHYISCITDDKEITVEKTAEMLIQ
Ga0272436_100070450	F017941	N/A	MKIADLEKNNDQSIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272436_100070454	F003820	N/A	MKLFSYLDYDDCTLMNNLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTIVSDKCAATSLSAVMTSIIEYVKSTIFSISESVRSSIVCYICKISDHLFKNCFQNKIDISSSHAFIFHLHEIIISKNKENEKMSSFEDSESKN
Ga0272436_100070455	F018839	N/A	MMITKVVTFNHLTSDLYAAVSIIAMFIESKDEAKLIELNDFMILLNEDNFSLS
Ga0272436_100070465	F003820	N/A	MKLFSYLDYDDHTLMNDLQNKINNRLQNALSVCSENFTLLTRLRIFLQDVNNKQRVSYQLRSQLRTVIVKVMIVSDKRAATSLSVMTLIINYVKSTFSSTSESARSSIICYTCKISSHLFKNCSQNKINTSASHVFISHLHEIIISKNKENEKMFSENNEAKN
Ga0272436_100070469	F017941	N/A	MKIADLEKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNC
Ga0272436_100070470	F013598	N/A	MNFIINLSDSSEYNAILTIICRLSKKRHYISCITDDEDITVEKTAEMLIQ
Ga0272436_100070474	F017941	N/A	MKIADLKKNIEKSIYKQILETNEIDENCTLLREVVLKDETQYKDTKLRDC
Ga0272436_100070477	F055318	N/A	LNDIEALCDDEALCVDRVQSFRDRADFDNLNAHATSNLHADEKVK