Scaffold Ga0272436_1000695

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000695
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70592
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (20.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F008115	Metagenome	338	Y
F048017	Metagenome	148	Y
F055317	Metagenome	138	Y
F057010	Metagenome	136	N
F083460	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100069520	F057010	N/A	MTMKALKKRCEELKARLQAREIISSSSIYSERSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFDDAAEITQSRRERDCFNSYKIVNELLKELAQLFDDSDKEVNFHRNYYNLIQEQKKFSEFYTQFQQLFFYLDYQEKQLIVDLKNKINSQLQFAXVTQLIQFSTLKEIHFYLIRLNNDQRAIQEIKNREAMIKAXTTKQIIFAEKSIKATRRIIEMKMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDYTSKECSNRSFRINTLDDEFDHSSNFNSESDSKN
Ga0272436_100069535	F008115	N/A	MNFITELSLSEDYNIICTIIYYFIKEHHYVFCYXEDNDISVEETVXIMLXNIYRLHDLLSSIVSNRDSQFIFIMXKSLCKRLQIIASLFTAYHSEINDQTKXVNQDVERELRIYCNYMQNDXVKXISMIEFSDNVNMFSIISMISFYFNKEFHSXMSFNSDTTDYEITHEXIKARKANNIVIQMKELLNFNHQQLKKTKLIIEAQINKHRRNITYEVNDXVXLSFRNVKTMRLCKDLKDKQLNLYQITVKVSIFYHLHLSVSMKHLHSMFSLKLLXLYSEDSLSEQHSESLRSITIKDDEHXKIDDILNFKRYQDQIQYKVKXKDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272436_100069536	F048017	N/A	MSLANVSESAKXFKDCFQTILIFDKVDILFIDLKSSANSKSEVNLYQKVXLVNQMNEFCSEYKQAKNDNKLKLHSIKMKNCEIINDVLFRKNLLXVSENMHTKLLQEVHDQSSIFHLDNKXIIDLVSRFYYXSNHQATI
Ga0272436_100069539	F055317	N/A	MFTDEKNSTXENXSLDIXEKLAMNVDIFSNELYKLSYINSQLADNVIEVTQVRCNFNCDNFYLTINELLKKLAQSFHDFDKKDNYRRKYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVDLKNKINSRLXIFXTAQIKSLIKLSDIQNYLICLNNEHKAVREIKNKLLKHNDSKIIISITVQSSALKSDXSKSRSAVLTSIKNADVLVKTCFICHKSDHSFKECLNQFIKVNAVDENYDRFELDIESEFKSKN
Ga0272436_100069549	F001253	N/A	MKDVLISSTMSSSDDLFASKSLTIECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIREFNDHYAKKLIIHAIYLNLTVQDHMKHFIFMLITQLNQHQMIFEKNMNEQD
Ga0272436_100069558	F083460	GAG	MQLQMKSSDSQAYSDALLELNASSIEYTMRCRLHELSSHHLNHEESQDNSENDDENEVAEAV