Scaffold Ga0272436_1000676

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000676
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72085
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (29.85%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013598	Metagenome	269	Y
F028368	Metagenome	191	Y
F033265	Metagenome	177	Y
F048017	Metagenome	148	Y
F055317	Metagenome	138	Y
F087978	Metagenome	109	Y
F098339	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100067610	F033265	N/A	MFSVIEKMMTSQLKKXFELCYETFIDCMIYSVLLFQTETFNSYXLCEKVFASDXESQLIYSQSIILRSTINRNKSIKMLNANLEFTAITCRMTELSEYLXXNSATISIFSXSLQXFFSTSIKNFTLEXVLIQIQLTMKQLVNDLKLEKQMILSFKXKSYXASIINN
Ga0272436_100067611	F048017	N/A	MKNKQLSRRQVNYLNILSKFNFQIIFRSGKMNTKVDALIRMFLVNISESAQRLENHFQTILISDRVNVLSVESKANLYQQICMINQINELCSKYRQAMNDNKLKFHIIKLKNCKIIDDVLFRKDLLXISENMHTKLL
Ga0272436_100067613	F028368	N/A	MIIHINLVDKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADINHHEVILEKSXMNKNEILLNMQINIIVFSNQLNTFISIFLISLNSKHSSXSQSTSSTFIFQSKISRMFKXFVSTTIQKESFSIXSINIASFKMLLNHSKRNKIEVFALFMMNINREIMYNTQCNLNALNVSSINETAQNLKDIKAKLSLKYHEFLDVFD
Ga0272436_100067614	F055317	N/A	MTFKNTSDKDKAFVDLLQQTCSQAFSFIIDSQHTSSFIAFDESNAEIIIHDDMKVXKKRIYALNKETDCLVKMKQXDKSEIQQLKAKLQAFTAITVNVIIIAFLIVIYFEQSRYHKILDSLMFINEKNFTXENXSLDIRKKLAINIDIFSNELYKLSYINFQLADDIIKITQVKCDLNCDNFYLTVNELLEKLAQLFHDSDKKDNYRREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVIDLKNKINFRLRIFXTAQMKSLIKLSDIXNYLIRLNNEHRAVQNIKNKPLKHDDSKIIISKATITVQSSTLKSD
Ga0272436_100067619	F013598	N/A	MNFIINLFNSSEYNVILMIICQLLKERHYISCIIDDEDITVKKTAEMLI
Ga0272436_10006762	F087978	N/A	MFSSKLLQSYSEDSLSEQHSESLRSITIEDDEHXKMNNILNFRCYQDXIQYKVKXKDLDRNNEXYYVDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272436_10006768	F098339	N/A	MIEFVDNNILSSIIFLILFFMNKSFHSHMSFNSDIIKYESIRERLQIAQVKNIFNYMNKILIFAREALIKAXKQMMNQANKYRKKVNYKIESKMFLNEQNIVTARSFKKLNDKMLDSFQIIEFVDSFYK