Scaffold Ga0272436_1000569

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000569
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80894
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (47.83%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F007840	Metagenome	343	Y
F021896	Metagenome	216	Y
F028978	Metagenome	189	Y
F084912	Metagenome	111	N
F087980	Metagenome	109	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100056927	F021896	N/A	VTKNNLESEDFLKNVKCNLTFLNSDKEYIFSDETSERDNYSTIVINESSIEVREI
Ga0272436_100056934	F001253	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKPLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIEPLSLTKLKSIRGFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLSQHQMILGKT
Ga0272436_100056937	F001951	GAG	MMIMMKLKFIDSLRNERERDEDTVETTVTEMMIFEFKKLLINAEMLLTLMNETMMKTKRD
Ga0272436_100056940	F087980	N/A	VIENSVETFRVMQELQNQVQQHDVITSFSFIVLSSSVYIELNFQSLAMIAQIIAQILNNQSFLIIHLSANFVTIIIASRFEKLLDISEYEKDKDQLNA
Ga0272436_100056949	F000597	N/A	MKDVLISSTTSMSDDSFASETLITECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYSNLTVQDHTIDTASMLITRLDQHQIILEKT
Ga0272436_100056981	F084912	N/A	MKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDKFNHSLNFNSKSDSKN
Ga0272436_100056982	F104131	N/A	MSRLFKKHFKASFFIVEDNDSFAEIITSSMTMKALKKRCKELKARLQARKIILSSLIYFERSRFQKILDSSLFTDEKNSI
Ga0272436_100056983	F007840	N/A	MINVIERQNNTRESIESTARLIELLDDLQLIKYASFISINRISDKESSLIARKSNQSRESINSQIKQ
Ga0272436_100056986	F001253	GAG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKFITHAIYSNLTVQDHMKRFVSMLITRLSQHQMILGKT
Ga0272436_100056989	F028978	N/A	MKIADLEKNIEKSIYKQVLETNEIDENCTLLREVVLKDEAQYEDIKLRDCRVQNEILYRGNLL
Ga0272436_100056992	F028978	N/A	EKENDESIYRLILEANRINENCILLREVVLKDEAQYKDTKLRNCRVQNEILYRDDLL