Scaffold Ga0272436_1000562

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000562
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81245
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (58.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F061402	Metagenome	131	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_10005623	F000597	N/A	MMKDVLISLIMSSSNDLFASKSLTIECVLSNNEISYSLKSLIDIEAADYSFIDELIVQNVCDHLQIESLSLIKLKSIRKFNDHYAKKLIIHAIYLNLTV
Ga0272436_10005627	F069514	N/A	MIEFVDNNALFSVIFSTFFFLNKDFHSCMSFELDTIKYESFHECLQATKVENISEHMNKILTFAHESLVKT
Ga0272436_10005628	F094626	N/A	MMKQVNKHRKEVDYEIKSKMFLNERNIVTARFFKKLNDKMLDSFINLNLVDSSYKLKLSEFMHVHDIFYSDLLRFVVDDLLSDQKNESLESIVINDEDE
Ga0272436_10005629	F061402	N/A	MIEFINNNAISSLIEQSTFFLNKSFHSHMSFNLNSIEYEITQARIEADKAKNIFKHMK