Scaffold Ga0272436_1000526

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000526
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84038
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (28.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F032102	Metagenome	180	Y
F036036	Metagenome	170	Y
F059497	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100052661	F059497	N/A	MSIEDIDRKIVYNTQCKLNVLDVAFINASAQNLEDIKVKLSLKYQNFLNVFDQVQVNKLSFHRSYDHKIKLTNDATFSKC
Ga0272436_100052664	F001253	N/A	VTFIKYAMKDVLISSTMSSSNDLFTSKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLNQHQMILEKT
Ga0272436_100052669	F032102	N/A	MKIADLEKNVSESIYKQVLDMNEIDENCTLLRKAIERDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272436_100052671	F036036	N/A	MLVSLIHHLLSCFDQSFASEDQCSIHVIEYIFDSSDLQTFANAFILDDVRVEAHMRMKVLVHEEENQEDD
Ga0272436_100052674	F001253	GAG	VTFIKDAMKDVLISSTTSSSNDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLIIHAIYSNLTVQDHMKRSVSMLITRLDQHQMILEKT