Scaffold Ga0272436_1000497

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000497
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86479
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (19.48%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F004755	Metagenome	424	Y
F026450	Metagenome	197	Y
F028367	Metagenome	191	Y
F028368	Metagenome	191	Y
F028667	Metagenome	190	Y
F055317	Metagenome	138	Y
F059496	Metagenome	133	Y
F094620	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100049710	F059496	N/A	LIFKDSYNXILRIQKKIDTKASIYVMFRDCARLERNVFVTXKEDDVDEQDVNKRKEC
Ga0272436_100049722	F028667	GAG	MLNELRSQRDTTLKLNEQXIVVQVEHDKRLNQLEIKQMIIDTLKETNKRYQEKMLNLKNKLKEVVLHSANQLRSRQSTESRVSTKSLSRQSIKNHTRRKSFTLFNNDHHKSFKFSNLSVFIDEDESTXNSXRIKMNDKLQTNVDHFVNETICIVYVISRLEDDAAEHIFARRRHDASHSYISIDELFEHLKEIYDELNRNRKCRREYNALRQAEKSFNVFYFDFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQSVNNKQRVNYQLHSERRTVIVIVIIKVTIIPDKCAATSLSAVTTSIIKYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKINISISHAFTFRLHEIIISKNKENEKMSFKNSETKN
Ga0272436_100049723	F028367	N/A	LCKLDEILLKENYFEKSFLINTHLISQKXSFSLHLLINSDSVVYMIIHFNLVNKVCKKLKIQSISLTKEKLIKNYDEKIFKKTITHKILLNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTCYNSSLRLFFV
Ga0272436_100049724	F004755	N/A	MKDKIHSRLQFVXVDQLVQSDFLKEIHFYLIYLNNDQRVIREIKNKLKCINDVSKIIFYKATVITQSVDHLKSDHLKSCDAILTSVKEADILVESYFICHKSDHSSKKCLDRSTRISAVNKEYDRFDFNSNFNSKN
Ga0272436_100049730	F055317	GAG	LKAQLQAFTAITVNVIIIAFLIVIYFERFKYHKILDSSMFTDEKNSTXKNXSLDIREKLAINVDIFSNELYKLSYIHFQLADDVIKVTQVRRNLNCDNLYLTVNELLKKLAQSFHDSDKKDNYCREYINLIQESKKFSDFFNQFQRLYIYLKYQKNVLVVNLKNKINSRLXIFXTAQMKSLIKLSDIRNYLIRLNNEHRAVQEIKNKLLKHDDLKIIMSKAIIAVQSLTSKSDXSKSRSAVLTNVKNADVLVEICFVCHKSDHSFRECLNQSIKVNAVDENYDHFELNTESEFESKN
Ga0272436_100049731	F028368	N/A	LIDSDSVIYTIIHINLVNRVCKELKIQPISLIKEKLIKEYDEKIFKKTIIHKILSNLIIESHKKLTVSMLIADIDHHEVILEKSXMNKNEILLNMQIDVIVFSNQLDTFISIFSIFFNSKHSSXLQSTSSTFIFQSKISRMLKXSVSTTIQKESFIIQSIDVASFKTLLNHSKKNQTEVFTLFMKNINRKIAYNTQCNLNALNVSFVEKTTQNLKVIKVKLSSEYHDFLDVFDRVQLNKLSSHHFYDHKIELINDSTSSHCXAY
Ga0272436_100049734	F002432	GAG	MIKFSDNFNIFLITSMIFFYFNKEFHSXMSFDSNTTDYETTCERLEARKTDDIVIQMKKLLSFDHQQLKKMKLIIEVQINKYKRNITYEVNDXVXLSFKNVKTTRLCKDLKDKQLDFYQIIAKVSTSYHLHLSVSMKHLHSIFSSKLLXSCSENSLSEQHSESLRSITIEDDEHXKIDNILNFRRYQDQIQYKVKXKNLDKDDEXYYVDKEKFNDSEKVLNEFHKLYSSKLR
Ga0272436_100049755	F026450	N/A	MTMKALKKRCEELKARLQAREIISSSSIYFERSRFQKILDSSLFTDEKNSIXKNXYEKVQNKLKINVDLFSSERVKLSYVHFRLFNDAAEIIQSRRECDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINLXLXFA
Ga0272436_100049759	F094620	GAG	MMKFSDNFNTFSTISMISFYFNKDFHSXMSFNSDTTDYKMTRQRIKTRKIDDIVTXMSELLIFNYQQLKKIKQITEAQINKHRRDVIYKVDDQVXLVFENIKITRSCKDLKDKQLDLYLITVKVEIFYRFQLSRSMKHIHSMFSLKYLQSSLNNFLSRQHSESSRSMIIEENEEHXKVDNILNFRXYRERLQYKVKXIEINHDDKXYYVDKEKFNDLNEVLNEFHKLYSNKLH
Ga0272436_10004979	F002432	N/A	MQNDXAKXLSMIEFSENFNIFSIISMTLFYFNKSFHSRISFDSDTTNYETIYERLKARKADDIIIQMKELLIFDHQQLKKMKQIIEAQINKHRQDVIYEVNNXVXLFSRNIKTTKSCKNLKDKQLESYQITVKVEIFYYFRLLISMKQLHSMFSSKLLCSCLNDLLSEQHSESSKSLTIKDDEHXEIDDILNFRCYRDXIQYKVKXTKLDXNNEXYYVDKEEFKSSKEILVEFHKLYSDKSY