Scaffold Ga0272436_1000496

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000496
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86497
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (49.04%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F032102	Metagenome	180	Y
F037508	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100049611	F032102	N/A	MKIADLKKNISESIYKQILETNEIDENCMLLRKAITRDETQYEDIKLKNCRVQNEILYKDSQL
Ga0272436_100049615	F000597	N/A	MKKMLISSMMSMSNDSFTSESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIMQIVYDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTASMLITQLNQH
Ga0272436_100049616	F003820	N/A	VNNKQRVNYQLRSQLCTVIVKVTVVFDKCIATLLSVMTLIIDYVKSIFSSIFESARLSTICYTCKTLNHLFKNYSQNKINTSASHAFISRLHEIIILKNKKNEKMSSFKDSEAKN
Ga0272436_10004962	F037508	N/A	VIFRLEGDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLHDEQ
Ga0272436_100049621	F018839	N/A	MMIAKVVTFNHLTSNLYAAVFIIAMFIELKDEAKLTELNDFTILLNEDDFSLS
Ga0272436_100049623	F001253	N/A	VTFIKDVMKDVLISSTMSSLNDLFALKSLTTKCVLFSNKISYSLKSLIDIEAADNSFIDELIAQNVCNYLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDHMKRFIFMLIIQLDQHQMILEKT
Ga0272436_100049625	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCCCKYVALKQLNKLFSFFYSKFTKIFSFLNYNDITLMNNIQNKINNHLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQ
Ga0272436_10004963	F001253	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLDQHQMILEKT
Ga0272436_10004969	F013598	N/A	MNFIIDLSDSSEYNAILTIICKLSKKKHYISCITDDKDITVEKTAEMLIQ