Scaffold Ga0272436_1000435

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000435
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93948
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (43.44%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F007840	Metagenome	343	Y
F013598	Metagenome	269	Y
F036036	Metagenome	170	Y
F084912	Metagenome	111	N
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000435115	F007840	N/A	MINAIKRQNNTRKSIELTAKLIELLNDLQLIKYTSFISINKISDKESSLIARESINSQIK
Ga0272436_1000435116	F104131	N/A	MSHLFKEYFEASFFIVEDNDSFVEIITSSMIIKALKKRCKELKAKLQAREIISSSLIYFKHFKFQKILDSSLFTDEKNFI
Ga0272436_1000435117	F084912	N/A	VKKSIKATCRIIEMKMTDQSKLHDAVLTNIKENDLLIENCFLCHKSDHTSKECLNKSFKINTLNDKFDHSLNFDSESDSKN
Ga0272436_1000435119	F000597	N/A	MSDDFFASESLTIECVLSSNEINYSLKSLINIKVADYSFIDEVITQIVYDQLQIESLTLIKAKSIQEFDDHYAKKLITYIIYSNLTVQNHTIETASMLIIQLDQHQMILEKT
Ga0272436_100043581	F036036	N/A	MFISLIHHLFSCFDQNFTSKDQSFIHLFRYILDSIDLQAFANAFILDDVRIEAHMRMKALVHEEEDQKDD
Ga0272436_100043582	F013598	N/A	MNFIINLFDSYDYNAILTVICKLLKERHYIFCIIDDEDITAEKIAEMLIQ
Ga0272436_100043590	F000597	N/A	MKDVLISLMMNMSDDSFASESLIIEYVLSSNEISYSLKSLINIKAADYSFINKVIMQIVCDQLQIKSLTLIKTKSIQEFDNHYAKKLIIHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT