Scaffold Ga0272436_1000420

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000420
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96475
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (46.94%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013598	Metagenome	269	Y
F025887	Metagenome	199	Y
F036036	Metagenome	170	Y
F048685	Metagenome	147	Y
F061402	Metagenome	131	Y
F065269	Metagenome	127	Y
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100042013	F061402	N/A	MIEFIDNNAISSSIEQSTFFLNKSFHSHMSFNSNSIKYEITQARIKADKAKNIFEHMK
Ga0272436_100042018	F025887	N/A	VTENNILVFFFISMSDDSFNFKSFTVDVILNNLEKIFRFLALINIEVIDMTFIDESLMSELCKHFDIQSILLLKSKSI
Ga0272436_100042020	F065269	N/A	MIKSTELESESMSTTRYETQDAERKSLLSQNQTASEEEDMNASLNIEEENMNALLFDHEMIKISISTELNA
Ga0272436_100042022	F025887	N/A	MSDDSFNFKSFTVDVILNNVKKIFRSFTLINTEVIDMTFIDESLISELCECFDIQSKSKLNQLYDETSD
Ga0272436_10004203	F048685	GAG	VLRDFDDERVCYQRITILTLNRMKIADLEKNVSESIYKQVLDVNEIDENCTLLREAIERDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272436_100042031	F061402	N/A	MIEFVDNNAISSSIEQLMFFLNKRFHSHMSFDLNSIEYKITQARIEANKAKNIFKHMK
Ga0272436_100042034	F084912	N/A	MTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDYSLNFNSESDSKN
Ga0272436_10004204	F013598	N/A	MNFIIDLSDSYDYNAILTVICRLLKERHYISCITDDEDITVEKTAEMLLQ
Ga0272436_100042043	F048685	N/A	MYRPGKQNIKADALTRRADAVPRDSEDERVRYQRTTILTPNRMEIADLEKNISEPIYKQVLEANGTDEDCTLLREAIARGEAQYEGIKLKDCRVQDGILYKGSQL
Ga0272436_10004205	F036036	N/A	MLVSLIHHLLSCFDQSFASEDQCSIHVIEYIFDSSDLQAFASAFILDDVRVEAHTRVKALVHEEEDQEDD