Scaffold Ga0272436_1000388

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000388
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101183
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (45.93%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F036036	Metagenome	170	Y
F059497	Metagenome	133	Y
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000388100	F003820	N/A	MKLFSYLDYNDCTLMNDLQNKINNRLQNALSVCSENFTSLTCLRIFLQDVNNKQRVNYQLRSQLRTVIIKVIVISDKCIATSLSAVMTLIIKYIKSTIFSISESVRSFIICYICKISDHLFKNCSQNKINISTFHAFISRLHEIIISKNKENEKMSSFEDNEAKN
Ga0272436_1000388101	F000597	N/A	MKDVLISSMISMSDDSFASESLIIECVLSSNEISYSLKSLINIEAADYLFIDEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLIIHVIYLNLTVQDHMIDTAFMLIT
Ga0272436_1000388104	F017941	N/A	MKITDLKKNNDQSIYKQILETNEIDENCTLLREVIARDEAQCKDIKLKNC
Ga0272436_1000388105	F013598	N/A	MNFIIDLFDSYNYNAILTVICRLSKETHYISCIIDDEDITAEKTAEMLIQ
Ga0272436_1000388106	F036036	N/A	MLISLIHHLFSCFDQSFTSENQSLVHLFRYILDSINLQAFASAFILNDVRVEAHMRMKALVHEEENQEDD
Ga0272436_1000388111	F084912	N/A	MKMTDQSKSRDAVLTNIKENDLLIENCFLCHKSDHTSKECLNKSFRINALNDEFDHSLNFDSESDSKN
Ga0272436_1000388119	F059497	GAG	MFIKDIDRKIVYNTQCKLDIINIFSVNETTQNLEDIKVKLSSKYQNFLDIFDQAQADKLSSHHLYDHKIELTSDATSSRCRAY
Ga0272436_1000388121	F017941	N/A	MKIADLEKNVSESIYKQVLDVNEIDENCTLLREAIERYEAQCKDIKLKNC
Ga0272436_1000388126	F001253	GAG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFDDHYAKKLITHAIYSNLTVQDHMKRFVSMLITRLNQHQMILEKT