Scaffold Ga0272436_1000372

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000372
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104203
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (62.04%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F018839	Metagenome	232	Y
F032102	Metagenome	180	Y
F036035	Metagenome	170	Y
F037508	Metagenome	167	Y
F069514	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_100037211	F037508	N/A	VIFRLEDDADQQIYAKRRVDAFSLYQSLSELLKHLKEIYEDQNLIRKCRREYVALKQLNKFFSFFYSEFTRIFSFLNYDDIILMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQ
Ga0272436_100037212	F001253	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFVSMLIIRLDQHQMILEKT
Ga0272436_100037215	F032102	N/A	MKIADLEKNIDESIYKQVLETNEIDENCTLLREAIARDEAQYEGTKLRDCRVQNEILYRNDLL
Ga0272436_100037219	F001253	GAGG	VTFIKDMMKDVLISSTMSSSNDFFASKSLTTECILSSNKISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKFIIHAIYLNLTV
Ga0272436_100037220	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEDLIELDDFMILLNEDDFSLSRVTTEEVDLFSI
Ga0272436_100037222	F069514	GAG	MIKFVDNNALFSIIFSIFFFLNKDFHSHMSFELDTIEYESFRECLQATKVKNISEHMNKILTFARESLVKTRKQIIQQANKHRKEVDYEIESKMFLNE
Ga0272436_10003723	F032102	N/A	MKIADLEKNISESIYKQILETNEINENCMLLREAIARDETQYEDIKLKNCRVQNEILYKDSQL
Ga0272436_10003726	F036035	N/A	MKDRMKDDAMQKEYYELEKASKNHEHDDNDHSNDTLDKHTESISNCDVIEESNERKRK