Scaffold Ga0272436_1000296

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000296
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120705
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (55.94%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001253	Metagenome	736	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F021452	Metagenome	218	Y
F032102	Metagenome	180	Y
F037508	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000296126	F037508	N/A	VTFRLDDDADEQIYAKRRIDAFSFYLSLTKLLKHLNEIYDDQNRNRKCRREYNALKQSNKSFSFFYFEFTKIFSFLDYDDRTLMNDLQNKINNRLQNALSVCLIKFSSLDKLKTFLQRMNNKQ
Ga0272436_1000296127	F000597	GAGG	VTFIKDAMKDVLISSTMSSSDDFFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDIASMLITQLDQHQMILEKT
Ga0272436_1000296128	F018839	N/A	MMIVKVVTFNHLTSDLYVAVFIIAMFIELKDEAKLIELDDFTILLNEDDFSLSLVTTEEINLFSI
Ga0272436_1000296132	F021452	N/A	VTESDILVFCFISMPDDSFDFKSFTVDVILNSLEKIFRFLALIDTEVTDMTFIDESLMSELCERFDIQSISLSKLKLIQSYDEISDRKSITHALYTSIMIQEHKNEMMFLLITCLDQHKIIIENL
Ga0272436_1000296135	F001253	GAGG	VTFIKDVMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKPIRGFDGHYAKKLIIHAIYSNLTVQDHMKRFASMLITRLDQHQMILEKT
Ga0272436_1000296138	F032102	N/A	MKIADLEKDVSEPIYKQVLDANEIDENCTLLREAIERGEAQCEGIKLKDCRVQNEILYKGSQL
Ga0272436_1000296139	F013598	N/A	MNFIIGLPDSYGYNAILTVICRLSKERHYIPCITDDEDITAEKTAEMLLQ