NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1000288

Scaffold Ga0272436_1000288


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1000288 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121556
Total Scaffold Genes135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (37.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F032102Metagenome180Y
F059497Metagenome133Y
F065269Metagenome127Y
F084912Metagenome111N
F104131Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_1000288109F065269N/AMTRSTELESESVSTTRYETQNAERKLLLSQNQTASEEEDTNASLNIEKENMNALFFDHEMIKISISTELNA
Ga0272436_1000288117F059497GAGMLIEDIDRKIVYNTQCKLNVLDVAFINASAQNLEDIKVKLSLKYQNFLDVFDRAQVNKLSSHRSYDHKIKLTNDVTSSRCRAY
Ga0272436_1000288119F084912N/AMKMTDQLKSHNAVLTKIKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDYSLNFDSEFDSKN
Ga0272436_1000288120F104131N/AMFRLFKEHFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSI
Ga0272436_1000288132F013598N/AMNFIIDLSDSYDYNAILTVICRLLKERHYISCIIDDEDITVEKTAEMLLQ
Ga0272436_1000288133F032102N/AMKIADLEKNVSESIYKQVLDANEIDKNCTLLREAIERDEAQCEDIKLKNCRVQNEILYKDSQL
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