Scaffold Ga0272436_1000286

Overview

Basic Information

• Taxon OID: 3300030523
• Scaffold ID: Ga0272436_1000286
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 121750
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (44.63%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.9
  • Long. (^o): 159.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F006206	Metagenome	378	Y
F013598	Metagenome	269	Y
F018839	Metagenome	232	Y
F021452	Metagenome	218	Y
F025887	Metagenome	199	Y
F033264	Metagenome	177	N
F036036	Metagenome	170	Y
F044226	Metagenome	154	Y
F061402	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272436_1000286100	F013598	N/A	MNFIIDLSDSYDYNAILTVICRLLKERHYIFCITDDEDITAEKTAEMLIQ
Ga0272436_1000286104	F000597	N/A	MKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272436_1000286110	F006206	N/A	LCKLDEILLKENYFEKSFLIDAHLISQKRSFSLRSLIDSDSVVYTIIHFNLVDKVCEKLKIQSISLAKKKLIRDYDEKIFKKTITHKILLNLIIESHKKLTVSMLIADIDHYEVILSKL
Ga0272436_1000286114	F044226	GAG	MMKFNDNFNIFSITSMILFYFNKEFHLRMSFDSDTTDYKTTCERLEARKTDDIVIQMKELLSFDHQ
Ga0272436_1000286116	F018839	N/A	MMIAKVVTFNHLTSDLYAAISIIAMFIESKDEAKLTELDDFMILLNEDDFSLSQVMTKEINLFST
Ga0272436_1000286118	F061402	N/A	MIEFIDNNAISTSIEQSTFFLNKNFHFHMSFDSNSIEYEITQARIEADKAKNIFEHMK
Ga0272436_1000286120	F025887	N/A	MFDDSFDFKSFTVDVILNSLEKIFRSLALINTEVTDMTFIDESLMSKLCECFDIQSISLLKSKSI
Ga0272436_100028676	F061402	N/A	MIEFINNNAISLSIEQSMFFLNKSFHSHMSFDLNSIEYEIIQARIEADKAKNIFEHMK
Ga0272436_100028680	F021452	N/A	MFDNSFDFKSFTVDVILSSLEKIFRFFALINTEVTDMTFIDKFLMSKLCERFDIQSISLSKSKLIQLYDEIFNRKLITHALYTLIIIQEHKNEMMSLLITCLDQHKIIIENF
Ga0272436_100028683	F006206	N/A	VKIISLCNLDEILSKENYFDKSFLVNALLILQNESFSLCSLIDSNSVVYMIIHINLVDRVCKELRIQSISLTKEKLIKEYDEKISKKTITHKILSNLIIESHKKLTVSMLIADIDHHEVILEKS
Ga0272436_100028692	F033264	N/A	LIDIEATDYSFIDELIVQNIYDHLQIEFLSLIKLKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLDQHQIILEKT
Ga0272436_100028694	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIKLDDFTILLNEDDFSLS
Ga0272436_100028699	F036036	N/A	MLISLIHHLFSCFDQSFTSEDQSLVHLFRYILDSIDLQAFASAFILDDVRVKAHTRMKVLVHEEESQEDD